PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG599900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 264aa    MW: 29400 Da    PI: 6.6065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG599900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-063483154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +++ ++erE+r Rd+ N+ f eL  +l ++     + + Ka iL  +++ +k+L
  Pavir.2NG599900.1.p 34 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRMLKDL 83
                         678899**********************97....57788999999999988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-1030104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-1230101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-43188No hitNo description
PROSITE profilePS5088811.2933383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-53483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVPRDRAHGA AGPPTENLVQ GPILNNKCEK KAPKKVHKSE REKRKRDKQN DLFGELGNML  60
EPDRQNNGKA CILSDTTRML KDLLSQVESL RQENGALKNE SRYVALERNE LLDENNMIRN  120
EVSELQNELR MRMEGNPIWS HDATRSNLTA PHPATTVFAL QHSPHPPVIA TMAPPLQQLA  180
VLEQSYTAPR RELQLFPEAA STEDTEPPQD QGISNHVARP QARYPTRMAT LPAHVYPILP  240
RMEDEQCSSG TTGSGDESGI GNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203990.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958406.11e-164PREDICTED: uncharacterized protein LOC101768866
RefseqXP_012698879.11e-164PREDICTED: uncharacterized protein LOC101768866
RefseqXP_012698880.11e-164PREDICTED: uncharacterized protein LOC101768866
TrEMBLC5X3661e-160C5X366_SORBI; Putative uncharacterized protein Sb02g040140
STRINGSb02g040140.11e-160(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-29bHLH family protein